HL_4XEJ_243

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_243 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.4321

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4XEJ|1|A23S|G|2304
4XEJ|1|A23S|A|2305
4XEJ|1|A23S|C|2306
4XEJ|1|A23S|G|2307
4XEJ|1|A23S|G|2308
4XEJ|1|A23S|A|2309
4XEJ|1|A23S|A|2310
4XEJ|1|A23S|A|2311
4XEJ|1|A23S|U|2312

Current chains

Chain A23S

23S ribosomal RNA

Nearby chains

Chain AL05

50S ribosomal protein L5