HL_4XEJ_248

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

4XEJ|1|B23S|G|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_248 not in the Motif Atlas

Homologous match to HL_9DFE_003

Geometric discrepancy: 0.1142

The information below is about HL_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4XEJ|1|B23S|G|123
4XEJ|1|B23S|G|124
4XEJ|1|B23S|G|125
4XEJ|1|B23S|A|126
4XEJ|1|B23S|A|127
4XEJ|1|B23S|C|128

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain BL23

50S ribosomal protein L23

Chain BL34

50S ribosomal protein L34