HL_4XEJ_251

3D structure

PDB id

4XEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

IRES bound to bacterial Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

UCCG

Length

4 nucleotides

Bulged bases

4XEJ|1|B23S|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4XEJ_251 not in the Motif Atlas

Geometric match to HL_8B0X_094

Geometric discrepancy: 0.3873

The information below is about HL_8B0X_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4XEJ|1|B23S|U|2144
4XEJ|1|B23S|C|2145
4XEJ|1|B23S|C|2146
4XEJ|1|B23S|G|2147

Current chains

Chain B23S

23S ribosomal RNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA