HL_4Y4O_005

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

4Y4O|1|1A|A|185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4O_005 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0301

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

4Y4O|1|1A|G|183
4Y4O|1|1A|A|184
4Y4O|1|1A|A|185
4Y4O|1|1A|A|186
4Y4O|1|1A|C|187
4Y4O|1|1A|A|188
4Y4O|1|1A|U|189
4Y4O|1|1A|C|190

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15