4Y4O Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4Y4O_001 | 1/1A/58:67 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_4Y4O_002 | 1/1A/86:94 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
| HL_4Y4O_003 | 1/1A/121:126 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
| HL_4Y4O_004 | 1/1A/136:141 | No text annotation Not in a motif group | homologous HL_7RQB_004 NA | |
| HL_4Y4O_005 | 1/1A/183:190 | No text annotation Not in a motif group | geometric HL_7RQB_006 NA | |
| HL_4Y4O_006 | 1/1A/214:219 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_4Y4O_007 | 1/1A/235:241 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_4Y4O_008 | 1/1A/269:275 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_34168.3 | |
| HL_4Y4O_009 | 1/1A/329:336 | No text annotation Not in a motif group | homologous HL_7RQB_010 NA | |
| HL_4Y4O_010 | 1/1A/343:347 | No text annotation Not in a motif group | homologous HL_7RQB_011 NA | |
| HL_4Y4O_011 | 1/1A/351:359 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4Y4O_012 | 1/1A/409:419 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_4Y4O_013 | 1/1A/437:444 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4Y4O_014 | 1/1A/488:493 | No text annotation Not in a motif group | homologous HL_7RQB_015 NA | |
| HL_4Y4O_015 | 1/1A/513:518 | No text annotation Not in a motif group | homologous HL_7RQB_016 NA | |
| HL_4Y4O_017 | 1/1A/589:598 | No text annotation Not in a motif group | geometric HL_7RQB_018 NA | |
| HL_4Y4O_018 | 1/1A/635:641 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_4Y4O_019 | 1/1A/654:659 | No text annotation Not in a motif group | homologous HL_7RQB_020 NA | |
| HL_4Y4O_020 | 1/1A/666:672 | No text annotation Not in a motif group | homologous HL_7RQB_021 NA | |
| HL_4Y4O_021 | 1/1A/759:766 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_4Y4O_022 | 1/1A/791:800 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4Y4O_023 | 1/1A/826:832 | No text annotation Not in a motif group | homologous HL_7RQB_024 NA | |
| HL_4Y4O_024 | 1/1A/873:878 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_4Y4O_025 | 1/1A/931:938 | No text annotation Not in a motif group | homologous HL_7RQB_026 NA | |
| HL_4Y4O_026 | 1/1A/1000:1007 | No text annotation Not in a motif group | homologous HL_7RQB_027 NA | |
| HL_4Y4O_027 | 1/1A/1024:1031 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_4Y4O_030 | 1/1A/1217:1223 | No text annotation Not in a motif group | homologous HL_7RQB_031 NA | |
| HL_4Y4O_031 | 1/1A/1268:1273 | No text annotation Not in a motif group | homologous HL_7RQB_032 NA | |
| HL_4Y4O_032 | 1/1A/1327:1335 | No text annotation Not in a motif group | homologous HL_7RQB_033 NA | |
| HL_4Y4O_033 | 1/1A/1370:1376 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
| HL_4Y4O_034 | 1/1A/1409:1414 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_4Y4O_035 | 1/1A/1435:1444 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_4Y4O_036 | 1/1A/1499:1506 | No text annotation Not in a motif group | homologous HL_7RQB_037 NA | |
| HL_4Y4O_037 | 1/1A/1538:1544 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_4Y4O_038 | 1/1A/1612:1615 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4Y4O_039 | 1/1A/1658:1665 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_4Y4O_040 | 1/1A/1677:1682 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
| HL_4Y4O_041 | 1/1A/1738:1743 | No text annotation Not in a motif group | homologous HL_7RQB_042 NA | |
| HL_4Y4O_042 | 1/1A/1765:1771 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_4Y4O_043 | 1/1A/1783:1787 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4Y4O_044 | 1/1A/1808:1818 | No text annotation Not in a motif group | homologous HL_7RQB_045 NA | |
| HL_4Y4O_045 | 1/1A/1837:1842 | No text annotation Not in a motif group | homologous HL_7RQB_046 NA | |
| HL_4Y4O_046 | 1/1A/1895:1900 | No text annotation Not in a motif group | homologous HL_7RQB_047 NA | |
| HL_4Y4O_047 | 1/1A/1931:1943 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_4Y4O_048 | 1/1A/1971:1979 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_4Y4O_049 | 1/1A/2049:2058 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_4Y4O_051 | 1/1A/2226:2231 | No text annotation Not in a motif group | homologous HL_7RQB_052 NA | |
| HL_4Y4O_052 | 1/1A/2260:2268 | No text annotation Not in a motif group | homologous HL_7RQB_053 NA | |
| HL_4Y4O_053 | 1/1A/2276:2288 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_4Y4O_054 | 1/1A/2315:2325 | No text annotation Not in a motif group | homologous HL_7RQB_055 NA | |
| HL_4Y4O_055 | 1/1A/2336:2343 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_4Y4O_056 | 1/1A/2367:2374 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_4Y4O_057 | 1/1A/2386:2391 | No text annotation Not in a motif group | homologous HL_7RQB_058 NA | |
| HL_4Y4O_058 | 1/1A/2416:2425 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_4Y4O_059 | 1/1A/2483:2491 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
| HL_4Y4O_060 | 1/1A/2540:2547 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
| HL_4Y4O_061 | 1/1A/2563:2569 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_4Y4O_062 | 1/1A/2606:2611 | No text annotation Not in a motif group | homologous HL_7RQB_063 NA | |
| HL_4Y4O_063 | 1/1A/2670:2675 | No text annotation Not in a motif group | homologous HL_7RQB_064 NA | |
| HL_4Y4O_064 | 1/1A/2713:2718 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_4Y4O_065 | 1/1A/2758:2772 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_4Y4O_067 | 1/1A/2829:2837 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
| HL_4Y4O_068 | 1/1A/2866:2871 | No text annotation Not in a motif group | homologous HL_7RQB_069 NA | |
| HL_4Y4O_069 | 1/1B/38:44 | No text annotation Not in a motif group | geometric HL_7RQB_070 NA | |
| HL_4Y4O_070 | 1/1B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA | |
| HL_4Y4O_071 | 1/1a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4Y4O_073 | 1/1a/158:163 | GNRA Not in a motif group | homologous HL_6CZR_074 HL_53845.3 | |
| HL_4Y4O_074 | 1/1a/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
| HL_4Y4O_075 | 1/1a/200:217 | No text annotation Not in a motif group | homologous HL_6CZR_076 HL_34168.3 | |
| HL_4Y4O_076 | 1/1a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
| HL_4Y4O_077 | 1/1a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_4Y4O_078 | 1/1a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4Y4O_080 | 1/1a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
| HL_4Y4O_081 | 1/1a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
| HL_4Y4O_082 | 1/1a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_4Y4O_083 | 1/1a/521:528 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_4Y4O_084 | 1/1a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_4Y4O_085 | 1/1a/689:698 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.2 | |
| HL_4Y4O_086 | 1/1a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
| HL_4Y4O_087 | 1/1a/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.2 | |
| HL_4Y4O_088 | 1/1a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_4Y4O_089 | 1/1a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4Y4O_090 | 1/1a/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
| HL_4Y4O_091 | 1/1a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4Y4O_092 | 1/1a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_4Y4O_094 | 1/1a/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_4Y4O_095 | 1/1a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4Y4O_096 | 1/1a/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4Y4O_097 | 1/1a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4Y4O_098 | 1/1a/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
| HL_4Y4O_099 | 1/1a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
| HL_4Y4O_100 | 1/1a/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4Y4O_101 | 1/1a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_4Y4O_102 | 1/1a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4Y4O_103 | 1/2A/59:68 | No text annotation Not in a motif group | homologous HL_7RQB_001 NA | |
| HL_4Y4O_104 | 1/2A/87:95 | No text annotation Not in a motif group | homologous HL_7RQB_002 NA | |
| HL_4Y4O_105 | 1/2A/123:128 | No text annotation Not in a motif group | homologous HL_7RQB_003 NA | |
| HL_4Y4O_106 | 1/2A/139:142A | No text annotation Not in a motif group | homologous HL_7RQB_004 NA | |
| HL_4Y4O_108 | 1/2A/194:201 | No text annotation Not in a motif group | homologous HL_7RQB_006 NA | |
| HL_4Y4O_109 | 1/2A/225:230 | No text annotation Not in a motif group | homologous HL_7RQB_007 NA | |
| HL_4Y4O_110 | 1/2A/246:252 | No text annotation Not in a motif group | homologous HL_7RQB_008 NA | |
| HL_4Y4O_111 | 1/2A/271I:271O | Other HL Not in a motif group | ||
| HL_4Y4O_112 | 1/2A/305:312 | T-loop with 1 bulged base Not in a motif group | ||
| HL_4Y4O_113 | 1/2A/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_70546.2 | |
| HL_4Y4O_114 | 1/2A/327:335 | No text annotation Not in a motif group | homologous HL_7RQB_012 NA | |
| HL_4Y4O_115 | 1/2A/382:392 | No text annotation Not in a motif group | homologous HL_7RQB_013 NA | |
| HL_4Y4O_116 | 1/2A/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4Y4O_117 | 1/2A/462:467 | GNRA Not in a motif group | ||
| HL_4Y4O_118 | 1/2A/487:493 | GNRA Not in a motif group | ||
| HL_4Y4O_120 | 1/2A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | ||
| HL_4Y4O_121 | 1/2A/612:615 | No text annotation Not in a motif group | homologous HL_7RQB_019 NA | |
| HL_4Y4O_122 | 1/2A/629:634 | GNRA Not in a motif group | ||
| HL_4Y4O_123 | 1/2A/641:647 | GNRA with one bulged base Not in a motif group | ||
| HL_4Y4O_124 | 1/2A/712:719 | No text annotation Not in a motif group | homologous HL_7RQB_022 NA | |
| HL_4Y4O_125 | 1/2A/744:753 | No text annotation Not in a motif group | homologous HL_7RQB_023 NA | |
| HL_4Y4O_126 | 1/2A/779:785 | No text annotation Not in a motif group | homologous HL_7RQB_024 NA | |
| HL_4Y4O_127 | 1/2A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 NA | |
| HL_4Y4O_129 | 1/2A/955:962 | GNRA Not in a motif group | ||
| HL_4Y4O_130 | 1/2A/978:985 | No text annotation Not in a motif group | homologous HL_7RQB_028 NA | |
| HL_4Y4O_133 | 1/2A/1222:1227 | GNRA Not in a motif group | ||
| HL_4Y4O_134 | 1/2A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | ||
| HL_4Y4O_135 | 1/2A/1324:1330 | No text annotation Not in a motif group | homologous HL_7RQB_034 NA | |
| HL_4Y4O_136 | 1/2A/1363:1368 | Other HL Not in a motif group | ||
| HL_4Y4O_137 | 1/2A/1389:1398 | No text annotation Not in a motif group | homologous HL_7RQB_036 NA | |
| HL_4Y4O_138 | 1/2A/1451:1459 | No text annotation Not in a motif group | homologous HL_7RQB_037 NA | |
| HL_4Y4O_139 | 1/2A/1492:1498 | No text annotation Not in a motif group | homologous HL_7RQB_038 NA | |
| HL_4Y4O_141 | 1/2A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4Y4O_142 | 1/2A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 NA | |
| HL_4Y4O_143 | 1/2A/1631:1635 | No text annotation Not in a motif group | homologous HL_7RQB_041 NA | |
| HL_4Y4O_144 | 1/2A/1691:1696 | UNCG Not in a motif group | ||
| HL_4Y4O_145 | 1/2A/1720:1742 | No text annotation Not in a motif group | homologous HL_7RQB_043 NA | |
| HL_4Y4O_146 | 1/2A/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4Y4O_147 | 1/2A/1777:1787 | No text annotation Not in a motif group | homologous HL_7RQB_045 NA | |
| HL_4Y4O_148 | 1/2A/1806:1811 | GNRA Not in a motif group | ||
| HL_4Y4O_149 | 1/2A/1864:1878 | GNRA Not in a motif group | ||
| HL_4Y4O_150 | 1/2A/1909:1921 | No text annotation Not in a motif group | homologous HL_7RQB_048 NA | |
| HL_4Y4O_151 | 1/2A/1949:1957 | No text annotation Not in a motif group | homologous HL_7RQB_049 NA | |
| HL_4Y4O_152 | 1/2A/1992:1996 | No text annotation Not in a motif group | ||
| HL_4Y4O_153 | 1/2A/2027:2036 | No text annotation Not in a motif group | homologous HL_7RQB_050 NA | |
| HL_4Y4O_155 | 1/2A/2205:2219 | No text annotation Not in a motif group | homologous HL_7RQB_052 NA | |
| HL_4Y4O_156 | 1/2A/2248:2256 | No text annotation Not in a motif group | homologous HL_5J7L_186 NA | |
| HL_4Y4O_157 | 1/2A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 NA | |
| HL_4Y4O_158 | 1/2A/2303:2313 | No text annotation Not in a motif group | homologous HL_7RQB_055 NA | |
| HL_4Y4O_159 | 1/2A/2324:2331 | No text annotation Not in a motif group | homologous HL_7RQB_056 NA | |
| HL_4Y4O_160 | 1/2A/2355:2362 | No text annotation Not in a motif group | homologous HL_7RQB_057 NA | |
| HL_4Y4O_161 | 1/2A/2374:2379 | GNRA Not in a motif group | ||
| HL_4Y4O_162 | 1/2A/2404:2413 | No text annotation Not in a motif group | homologous HL_7RQB_059 NA | |
| HL_4Y4O_163 | 1/2A/2471:2479 | No text annotation Not in a motif group | homologous HL_7RQB_060 NA | |
| HL_4Y4O_164 | 1/2A/2528:2535 | No text annotation Not in a motif group | homologous HL_7RQB_061 NA | |
| HL_4Y4O_165 | 1/2A/2551:2557 | No text annotation Not in a motif group | homologous HL_5J7L_195 NA | |
| HL_4Y4O_166 | 1/2A/2594:2599 | GNRA Not in a motif group | ||
| HL_4Y4O_167 | 1/2A/2658:2663 | GNRA Not in a motif group | ||
| HL_4Y4O_168 | 1/2A/2701:2706 | No text annotation Not in a motif group | homologous HL_7RQB_065 NA | |
| HL_4Y4O_169 | 1/2A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 NA | |
| HL_4Y4O_171 | 1/2A/2819:2827 | No text annotation Not in a motif group | homologous HL_7RQB_068 NA | |
| HL_4Y4O_172 | 1/2A/2856:2861 | GNRA Not in a motif group | ||
| HL_4Y4O_173 | 1/2B/38:44 | No text annotation Not in a motif group | homologous HL_7RQB_070 NA | |
| HL_4Y4O_174 | 1/2B/86:91 | No text annotation Not in a motif group | homologous HL_7RQB_071 NA | |
| HL_4Y4O_175 | 1/2a/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_4Y4O_177 | 1/2a/158:163 | GNRA Not in a motif group | homologous HL_4LFB_003 HL_85603.1 | |
| HL_4Y4O_178 | 1/2a/189C:189H | No text annotation Not in a motif group | homologous HL_6CZR_075 HL_61849.1 | |
| HL_4Y4O_179 | 1/2a/201:216 | No text annotation Not in a motif group | ||
| HL_4Y4O_180 | 1/2a/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
| HL_4Y4O_181 | 1/2a/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_4Y4O_182 | 1/2a/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4Y4O_183 | 1/2a/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
| HL_4Y4O_184 | 1/2a/379:384 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_85603.1 | |
| HL_4Y4O_185 | 1/2a/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_29960.1 | |
| HL_4Y4O_186 | 1/2a/458:473 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_85603.1 | |
| HL_4Y4O_187 | 1/2a/521:528 | No text annotation Not in a motif group | homologous HL_4LFB_013 NA | |
| HL_4Y4O_188 | 1/2a/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_4Y4O_189 | 1/2a/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_4Y4O_190 | 1/2a/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
| HL_4Y4O_191 | 1/2a/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_4Y4O_192 | 1/2a/838:848 | No text annotation Not in a motif group | homologous HL_6CZR_089 HL_69858.1 | |
| HL_4Y4O_193 | 1/2a/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4Y4O_194 | 1/2a/897:902 | GNRA Not in a motif group | homologous HL_5J7L_020 HL_85603.1 | |
| HL_4Y4O_195 | 1/2a/963:972 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_4Y4O_196 | 1/2a/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_4Y4O_197 | 1/2a/1076:1081 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_85603.1 | |
| HL_4Y4O_198 | 1/2a/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4Y4O_199 | 1/2a/1134:1140 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_4Y4O_200 | 1/2a/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4Y4O_201 | 1/2a/1265:1270 | Other HL Not in a motif group | homologous HL_4LFB_028 HL_85603.1 | |
| HL_4Y4O_202 | 1/2a/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_41998.2 | |
| HL_4Y4O_203 | 1/2a/1356:1366 | No text annotation Not in a motif group | ||
| HL_4Y4O_204 | 1/2a/1445:1457 | No text annotation Not in a motif group | homologous HL_6CZR_102 HL_49722.1 | |
| HL_4Y4O_205 | 1/2a/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4Y4O_016 | No text annotation | ||
| HL_4Y4O_028 | No text annotation | ||
| HL_4Y4O_029 | No text annotation | ||
| HL_4Y4O_050 | No text annotation | ||
| HL_4Y4O_066 | No text annotation | ||
| HL_4Y4O_072 | No text annotation | ||
| HL_4Y4O_079 | No text annotation | ||
| HL_4Y4O_093 | No text annotation | ||
| HL_4Y4O_107 | No text annotation | ||
| HL_4Y4O_119 | No text annotation | ||
| HL_4Y4O_128 | No text annotation | ||
| HL_4Y4O_131 | No text annotation | ||
| HL_4Y4O_132 | No text annotation | ||
| HL_4Y4O_140 | No text annotation | ||
| HL_4Y4O_154 | No text annotation | ||
| HL_4Y4O_170 | No text annotation | ||
| HL_4Y4O_176 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4Y4O_001 | 1/1A/24:30, 1/1A/535:541 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
| IL_4Y4O_002 | 1/1A/36:37, 1/1A/468:470 | Single bulged A Not in a motif group | homologous IL_7RQB_002 NA | |
| IL_4Y4O_003 | 1/1A/42:43, 1/1A/461:463 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_4Y4O_004 | 1/1A/80:84, 1/1A/96:103 | Kink-turn Not in a motif group | homologous IL_7RQB_004 NA | |
| IL_4Y4O_005 | 1/1A/172:173, 1/1A/201:203 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
| IL_4Y4O_006 | 1/1A/177:183, 1/1A/190:197 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_006 NA | |
| IL_4Y4O_007 | 1/1A/228:234, 1/1A/242:247 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_4Y4O_008 | 1/1A/291:292, 1/1A/392:394 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
| IL_4Y4O_011 | 1/1A/304:308, 1/1A/381:384 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 NA | |
| IL_4Y4O_012 | 1/1A/312:314, 1/1A/374:377 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_012 NA | |
| IL_4Y4O_013 | 1/1A/317:319, 1/1A/367:371 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_4Y4O_014 | 1/1A/507:510, 1/1A/521:534 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
| IL_4Y4O_015 | 1/1A/587:589, 1/1A/598:600 | No text annotation Not in a motif group | homologous IL_7RQB_015 NA | |
| IL_4Y4O_016 | 1/1A/629:633, 1/1A/643:647 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_4Y4O_017 | 1/1A/719:721, 1/1A/853:855 | No text annotation Not in a motif group | homologous IL_7RQB_017 NA | |
| IL_4Y4O_018 | 1/1A/721:725, 1/1A/846:853 | No text annotation Not in a motif group | geometric IL_7RQB_018 NA | |
| IL_4Y4O_019 | 1/1A/744:745, 1/1A/810:812 | Single bulged A Not in a motif group | homologous IL_7RQB_019 NA | |
| IL_4Y4O_020 | 1/1A/749:750, 1/1A/775:777 | Single bulged G Not in a motif group | geometric IL_7RQB_020 NA | |
| IL_4Y4O_021 | 1/1A/750:754, 1/1A/771:775 | Triple sheared Not in a motif group | homologous IL_7RQB_021 NA | |
| IL_4Y4O_022 | 1/1A/785:788, 1/1A/803:805 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4Y4O_023 | 1/1A/822:824, 1/1A/834:838 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 NA | |
| IL_4Y4O_024 | 1/1A/884:885, 1/1A/985:987 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_4Y4O_025 | 1/1A/891:893, 1/1A/976:979 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 NA | |
| IL_4Y4O_026 | 1/1A/893:897, 1/1A/973:976 | No text annotation Not in a motif group | homologous IL_7RQB_026 NA | |
| IL_4Y4O_027 | 1/1A/905:909, 1/1A/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_7RQB_027 NA | |
| IL_4Y4O_028 | 1/1A/909:910, 1/1A/959:961 | Minor groove platform Not in a motif group | geometric IL_7RQB_028 NA | |
| IL_4Y4O_029 | 1/1A/911:915, 1/1A/955:958 | C-loop Not in a motif group | homologous IL_7RQB_029 NA | |
| IL_4Y4O_030 | 1/1A/917:919, 1/1A/951:953 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_4Y4O_031 | 1/1A/922:924, 1/1A/945:948 | Minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_031 NA | |
| IL_4Y4O_032 | 1/1A/924:926, 1/1A/944:945 | Minor groove platform Not in a motif group | geometric IL_7RQB_032 NA | |
| IL_4Y4O_033 | 1/1A/927:928, 1/1A/941:943 | Single bulged A Not in a motif group | homologous IL_7RQB_033 NA | |
| IL_4Y4O_034 | 1/1A/997:999, 1/1A/1008:1010 | No text annotation Not in a motif group | homologous IL_7RQB_034 NA | |
| IL_4Y4O_035 | 1/1A/1040:1042, 1/1A/1205:1206 | Single bulged C Not in a motif group | homologous IL_7RQB_035 NA | |
| IL_4Y4O_036 | 1/1A/1044:1048, 1/1A/1199:1203 | UAA/GAN Not in a motif group | homologous IL_7RQB_036 NA | |
| IL_4Y4O_037 | 1/1A/1050:1057, 1/1A/1196:1197 | SSU/LSU pseudoknot Not in a motif group | homologous IL_7RQB_037 NA | |
| IL_4Y4O_038 | 1/1A/1057:1059, 1/1A/1195:1196 | Single bulged U Not in a motif group | geometric IL_7RQB_038 NA | |
| IL_4Y4O_039 | 1/1A/1064:1070, 1/1A/1185:1190 | No text annotation Not in a motif group | homologous IL_7RQB_039 NA | |
| IL_4Y4O_040 | 1/1A/1070:1076, 1/1A/1170:1185 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_4Y4O_041 | 1/1A/1077:1080, 1/1A/1167:1169 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4Y4O_042 | 1/1A/1089:1097, 1/1A/1154:1158 | Kink-turn Not in a motif group | homologous IL_7RQB_042 NA | |
| IL_4Y4O_044 | 1/1A/1241:1243, 1/1A/1293:1296 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_4Y4O_045 | 1/1A/1247:1251, 1/1A/1286:1289 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_4Y4O_046 | 1/1A/1253:1260, 1/1A/1280:1284 | Kink-turn Not in a motif group | homologous IL_7RQB_047 NA | |
| IL_4Y4O_047 | 1/1A/1264:1266, 1/1A/1275:1276 | Single bulged A Not in a motif group | homologous IL_7RQB_048 NA | |
| IL_4Y4O_048 | 1/1A/1308:1315, 1/1A/2033:2039 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_049 NA | |
| IL_4Y4O_049 | 1/1A/1356:1359, 1/1A/1649:1650 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_4Y4O_050 | 1/1A/1365:1369, 1/1A/1377:1379 | C-loop Not in a motif group | homologous IL_7RQB_051 NA | |
| IL_4Y4O_051 | 1/1A/1397:1401, 1/1A/1422:1426 | UAA/GAN Not in a motif group | homologous IL_7RQB_052 NA | |
| IL_4Y4O_052 | 1/1A/1403:1407, 1/1A/1416:1420 | tSH-tHW-tHS Not in a motif group | homologous IL_7RQB_053 NA | |
| IL_4Y4O_053 | 1/1A/1461:1462, 1/1A/1629:1633 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_4Y4O_054 | 1/1A/1463:1467, 1/1A/1624:1628 | UAA/GAN Not in a motif group | homologous IL_7RQB_055 NA | |
| IL_4Y4O_055 | 1/1A/1479:1481, 1/1A/1604:1607 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_4Y4O_056 | 1/1A/1483:1486, 1/1A/1598:1602 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_4Y4O_057 | 1/1A/1495:1497, 1/1A/1509:1510 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_4Y4O_058 | 1/1A/1498:1499, 1/1A/1506:1508 | Single bulged A Not in a motif group | geometric IL_7RQB_059 NA | |
| IL_4Y4O_059 | 1/1A/1516:1520, 1/1A/1566:1569 | UAA/GAN Not in a motif group | homologous IL_7RQB_060 NA | |
| IL_4Y4O_060 | 1/1A/1528:1529, 1/1A/1552:1558 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_4Y4O_061 | 1/1A/1535:1537, 1/1A/1545:1546 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_4Y4O_062 | 1/1A/1572:1576, 1/1A/1587:1593 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_4Y4O_063 | 1/1A/1698:1703, 1/1A/2026:2028 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4Y4O_064 | 1/1A/1710:1712, 1/1A/2017:2019 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_065 NA | |
| IL_4Y4O_065 | 1/1A/1713:1716, 1/1A/2015:2016 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_7RQB_066 NA | |
| IL_4Y4O_066 | 1/1A/1716:1721, 1/1A/2012:2015 | Intercalated tWH Not in a motif group | homologous IL_7RQB_067 NA | |
| IL_4Y4O_067 | 1/1A/1733:1738, 1/1A/1743:1749 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_7RQB_068 NA | |
| IL_4Y4O_068 | 1/1A/1801:1802, 1/1A/2002:2004 | Single bulged A Not in a motif group | homologous IL_7RQB_069 NA | |
| IL_4Y4O_069 | 1/1A/1829:1835, 1/1A/1844:1852 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_4Y4O_070 | 1/1A/1868:1871, 1/1A/1924:1925 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_4Y4O_071 | 1/1A/1872:1873, 1/1A/1920:1923 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 NA | |
| IL_4Y4O_072 | 1/1A/1877:1880, 1/1A/1915:1916 | Minor groove platform Not in a motif group | homologous IL_7RQB_073 NA | |
| IL_4Y4O_073 | 1/1A/1882:1886, 1/1A/1909:1913 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_4Y4O_074 | 1/1A/1887:1891, 1/1A/1904:1908 | Triple sheared Not in a motif group | homologous IL_7RQB_075 NA | |
| IL_4Y4O_075 | 1/1A/1955:1956, 1/1A/1986:1989 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
| IL_4Y4O_076 | 1/1A/1956:1967, 1/1A/1983:1986 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4Y4O_077 | 1/1A/2072:2074, 1/1A/2629:2630 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_4Y4O_078 | 1/1A/2076:2079, 1/1A/2623:2627 | No text annotation Not in a motif group | ||
| IL_4Y4O_079 | 1/1A/2089:2091, 1/1A/2454:2455 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4Y4O_080 | 1/1A/2092:2093, 1/1A/2450:2453 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_4Y4O_081 | 1/1A/2103:2105, 1/1A/2248:2251 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_082 NA | |
| IL_4Y4O_082 | 1/1A/2107:2109, 1/1A/2244:2246 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_4Y4O_083 | 1/1A/2123:2125, 1/1A/2208:2210 | Isolated cWH basepair Not in a motif group | geometric IL_4WZM_001 IL_86319.3 | |
| IL_4Y4O_090 | 1/1A/2309:2311, 1/1A/2329:2333 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_7RQB_088 NA | |
| IL_4Y4O_091 | 1/1A/2362:2365, 1/1A/2376:2379 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_4Y4O_092 | 1/1A/2413:2415, 1/1A/2426:2427 | Major groove platform Not in a motif group | homologous IL_7RQB_090 NA | |
| IL_4Y4O_093 | 1/1A/2465:2466, 1/1A/2510:2512 | Single stack bend Not in a motif group | homologous IL_7RQB_091 NA | |
| IL_4Y4O_095 | 1/1A/2468:2471, 1/1A/2505:2507 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
| IL_4Y4O_096 | 1/1A/2471:2473, 1/1A/2501:2505 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
| IL_4Y4O_097 | 1/1A/2478:2482, 1/1A/2492:2496 | Triple sheared Not in a motif group | homologous IL_7RQB_095 NA | |
| IL_4Y4O_098 | 1/1A/2519:2520, 1/1A/2592:2594 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4Y4O_099 | 1/1A/2522:2524, 1/1A/2586:2590 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 NA | |
| IL_4Y4O_100 | 1/1A/2524:2525, 1/1A/2583:2586 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_098 NA | |
| IL_4Y4O_101 | 1/1A/2534:2535, 1/1A/2552:2555 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 NA | |
| IL_4Y4O_102 | 1/1A/2600:2602, 1/1A/2616:2618 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4Y4O_103 | 1/1A/2603:2604, 1/1A/2613:2615 | Single bulged A Not in a motif group | geometric IL_4V9F_090 IL_37497.7 | |
| IL_4Y4O_104 | 1/1A/2648:2652, 1/1A/2787:2795 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
| IL_4Y4O_105 | 1/1A/2664:2670, 1/1A/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_7RQB_103 NA | |
| IL_4Y4O_106 | 1/1A/2692:2696, 1/1A/2738:2740 | C-loop Not in a motif group | homologous IL_7RQB_104 NA | |
| IL_4Y4O_107 | 1/1A/2699:2703, 1/1A/2731:2735 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4Y4O_108 | 1/1A/2707:2708, 1/1A/2723:2727 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
| IL_4Y4O_109 | 1/1A/2750:2755, 1/1A/2775:2780 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_4Y4O_110 | 1/1A/2848:2849, 1/1A/2888:2890 | Single bulged C Not in a motif group | homologous IL_7RQB_108 NA | |
| IL_4Y4O_111 | 1/1A/2853:2856, 1/1A/2880:2884 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_4Y4O_112 | 1/1A/2857:2862, 1/1A/2875:2879 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_4Y4O_113 | 1/1B/17:18, 1/1B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_4Y4O_115 | 1/1B/30:31, 1/1B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 NA | |
| IL_4Y4O_116 | 1/1B/34:38, 1/1B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_7RQB_114 NA | |
| IL_4Y4O_117 | 1/1B/71:79, 1/1B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_4Y4O_118 | 1/1a/30:32, 1/1a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
| IL_4Y4O_119 | 1/1a/44:45, 1/1a/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
| IL_4Y4O_120 | 1/1a/47:52, 1/1a/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
| IL_4Y4O_121 | 1/1a/54:56, 1/1a/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
| IL_4Y4O_122 | 1/1a/63:66, 1/1a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4Y4O_123 | 1/1a/67:69, 1/1a/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_4Y4O_124 | 1/1a/129:131, 1/1a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
| IL_4Y4O_125 | 1/1a/132:136, 1/1a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
| IL_4Y4O_126 | 1/1a/148:153, 1/1a/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4Y4O_127 | 1/1a/186:188, 1/1a/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
| IL_4Y4O_128 | 1/1a/242:247, 1/1a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_4Y4O_129 | 1/1a/249:252, 1/1a/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4Y4O_130 | 1/1a/292:293, 1/1a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4Y4O_131 | 1/1a/367:369, 1/1a/392:393 | Single bulged U Not in a motif group | homologous IL_5J7L_017 IL_83039.17 | |
| IL_4Y4O_132 | 1/1a/371:375, 1/1a/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4Y4O_133 | 1/1a/375:376, 1/1a/387:389 | Single bulged G Not in a motif group | homologous IL_4LFB_016 IL_00225.4 | |
| IL_4Y4O_134 | 1/1a/409:416, 1/1a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4Y4O_135 | 1/1a/446:450, 1/1a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4Y4O_136 | 1/1a/450:456, 1/1a/475:483 | No text annotation Not in a motif group | geometric IL_6CZR_131 IL_30149.1 | |
| IL_4Y4O_137 | 1/1a/504:511, 1/1a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.8 | |
| IL_4Y4O_138 | 1/1a/515:521, 1/1a/528:536 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_4Y4O_139 | 1/1a/569:575, 1/1a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_4Y4O_140 | 1/1a/580:584, 1/1a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.2 | |
| IL_4Y4O_141 | 1/1a/594:596, 1/1a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_4Y4O_142 | 1/1a/597:598, 1/1a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
| IL_4Y4O_143 | 1/1a/605:612, 1/1a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4Y4O_144 | 1/1a/654:655, 1/1a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_4Y4O_145 | 1/1a/657:658, 1/1a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
| IL_4Y4O_146 | 1/1a/662:666, 1/1a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4Y4O_147 | 1/1a/673:678, 1/1a/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
| IL_4Y4O_148 | 1/1a/683:688, 1/1a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4Y4O_149 | 1/1a/774:778, 1/1a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4Y4O_150 | 1/1a/779:783, 1/1a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
| IL_4Y4O_151 | 1/1a/887:894, 1/1a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4Y4O_152 | 1/1a/922:923, 1/1a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
| IL_4Y4O_153 | 1/1a/925:927, 1/1a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_4Y4O_154 | 1/1a/933:935, 1/1a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4Y4O_155 | 1/1a/953:954, 1/1a/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_4Y4O_156 | 1/1a/993:997, 1/1a/1044:1045 | Minor groove platform Not in a motif group | homologous IL_6CZR_151 IL_47078.1 | |
| IL_4Y4O_158 | 1/1a/1048:1050, 1/1a/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.17 | |
| IL_4Y4O_159 | 1/1a/1050:1052, 1/1a/1206:1208 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_70707.3 | |
| IL_4Y4O_160 | 1/1a/1052:1056, 1/1a/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_4Y4O_161 | 1/1a/1057:1058, 1/1a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
| IL_4Y4O_162 | 1/1a/1060:1061, 1/1a/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.17 | |
| IL_4Y4O_163 | 1/1a/1061:1063, 1/1a/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.3 | |
| IL_4Y4O_164 | 1/1a/1124:1127, 1/1a/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.7 | |
| IL_4Y4O_165 | 1/1a/1129:1132, 1/1a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4Y4O_166 | 1/1a/1247:1253, 1/1a/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4Y4O_167 | 1/1a/1255:1258, 1/1a/1277:1282 | No text annotation Not in a motif group | homologous IL_6CZR_161 IL_75461.4 | |
| IL_4Y4O_168 | 1/1a/1259:1260, 1/1a/1274:1276 | Not an internal loop Not in a motif group | homologous IL_4LFB_053 IL_80097.2 | |
| IL_4Y4O_169 | 1/1a/1260:1262, 1/1a/1273:1274 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_80097.2 | |
| IL_4Y4O_170 | 1/1a/1303:1308, 1/1a/1329:1334 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 | |
| IL_4Y4O_171 | 1/1a/1399:1401, 1/1a/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_4Y4O_172 | 1/1a/1401:1405, 1/1a/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
| IL_4Y4O_173 | 1/1a/1405:1409, 1/1a/1491:1496 | No text annotation Not in a motif group | homologous IL_6CZR_167 NA | |
| IL_4Y4O_174 | 1/1a/1412:1415, 1/1a/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_4Y4O_175 | 1/1a/1416:1419, 1/1a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_4Y4O_176 | 1/1a/1431:1435, 1/1a/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
| IL_4Y4O_177 | 1/1a/1435:1437, 1/1a/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
| IL_4Y4O_178 | 1/1a/1440:1443, 1/1a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.3 | |
| IL_4Y4O_179 | 1/2A/24:30, 1/2A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_7RQB_001 NA | |
| IL_4Y4O_180 | 1/2A/36:37, 1/2A/442:444 | Single bulged A Not in a motif group | ||
| IL_4Y4O_181 | 1/2A/42:43, 1/2A/434:436 | Minor groove platform Not in a motif group | ||
| IL_4Y4O_182 | 1/2A/81:85, 1/2A/97:105 | Kink-turn Not in a motif group | ||
| IL_4Y4O_183 | 1/2A/183:184, 1/2A/212:214 | Single stack bend Not in a motif group | homologous IL_7RQB_005 NA | |
| IL_4Y4O_184 | 1/2A/188:194, 1/2A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | ||
| IL_4Y4O_185 | 1/2A/239:245, 1/2A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | ||
| IL_4Y4O_186 | 1/2A/272D:272E, 1/2A/363E:364 | Major groove platform Not in a motif group | homologous IL_7RQB_009 NA | |
| IL_4Y4O_187 | 1/2A/272J:279, 1/2A/361:363 | No text annotation Not in a motif group | homologous IL_8VTW_009 IL_45612.4 | |
| IL_4Y4O_188 | 1/2A/280:284, 1/2A/357:360 | tSH-tHW Not in a motif group | homologous IL_7RQB_011 NA | |
| IL_4Y4O_189 | 1/2A/288:290, 1/2A/350:353 | Isolated tHS basepair with bulges Not in a motif group | ||
| IL_4Y4O_190 | 1/2A/293:295, 1/2A/343:347 | No text annotation Not in a motif group | homologous IL_7RQB_013 NA | |
| IL_4Y4O_191 | 1/2A/481:484, 1/2A/496:509 | No text annotation Not in a motif group | homologous IL_7RQB_014 NA | |
| IL_4Y4O_192 | 1/2A/564:566, 1/2A/575:577 | No text annotation Not in a motif group | homologous IL_7RQB_015 NA | |
| IL_4Y4O_193 | 1/2A/606:610, 1/2A/618:622 | AAA cross-strand stack Not in a motif group | ||
| IL_4Y4O_194 | 1/2A/672:674, 1/2A/806:808 | No text annotation Not in a motif group | geometric IL_7RQB_017 NA | |
| IL_4Y4O_195 | 1/2A/674:678, 1/2A/799:806 | tHW-tHW cross-strand stack Not in a motif group | ||
| IL_4Y4O_196 | 1/2A/697:698, 1/2A/763:765 | Single bulged A Not in a motif group | ||
| IL_4Y4O_197 | 1/2A/702:703, 1/2A/728:730 | Single bulged G Not in a motif group | ||
| IL_4Y4O_198 | 1/2A/703:707, 1/2A/724:728 | Triple sheared Not in a motif group | ||
| IL_4Y4O_199 | 1/2A/738:741, 1/2A/756:758 | Major groove platform with extra cWW Not in a motif group | homologous IL_7RQB_022 NA | |
| IL_4Y4O_200 | 1/2A/775:777, 1/2A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_023 NA | |
| IL_4Y4O_201 | 1/2A/837:838, 1/2A/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_4Y4O_202 | 1/2A/844:846, 1/2A/931:934 | Intercalated cWW Not in a motif group | geometric IL_7RQB_025 NA | |
| IL_4Y4O_203 | 1/2A/846:850, 1/2A/927:931 | No text annotation Not in a motif group | homologous IL_7RQB_026 NA | |
| IL_4Y4O_204 | 1/2A/858:862, 1/2A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | ||
| IL_4Y4O_205 | 1/2A/862:863, 1/2A/913:915 | Minor groove platform Not in a motif group | ||
| IL_4Y4O_206 | 1/2A/864:868, 1/2A/909:912 | C-loop Not in a motif group | ||
| IL_4Y4O_207 | 1/2A/870:872, 1/2A/905:907 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_030 NA | |
| IL_4Y4O_208 | 1/2A/875:877, 1/2A/899:902 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 NA | |
| IL_4Y4O_209 | 1/2A/877:879, 1/2A/898:899 | Minor groove platform Not in a motif group | ||
| IL_4Y4O_210 | 1/2A/880:881, 1/2A/895:897 | Single bulged A Not in a motif group | ||
| IL_4Y4O_211 | 1/2A/952:954, 1/2A/963:965 | CA cWW Not in a motif group | ||
| IL_4Y4O_212 | 1/2A/994:996, 1/2A/1159:1160 | Single bulged C Not in a motif group | ||
| IL_4Y4O_213 | 1/2A/998:1002, 1/2A/1153:1157 | UAA/GAN Not in a motif group | ||
| IL_4Y4O_214 | 1/2A/1004:1011, 1/2A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_7RQB_037 NA | |
| IL_4Y4O_215 | 1/2A/1011:1013, 1/2A/1149:1150 | Single bulged U Not in a motif group | ||
| IL_4Y4O_216 | 1/2A/1018:1024, 1/2A/1140:1144 | No text annotation Not in a motif group | homologous IL_7RQB_039 NA | |
| IL_4Y4O_217 | 1/2A/1024:1030, 1/2A/1124:1140 | No text annotation Not in a motif group | geometric IL_7RQB_040 NA | |
| IL_4Y4O_218 | 1/2A/1031:1034, 1/2A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4Y4O_221 | 1/2A/1196:1198, 1/2A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7RQB_045 NA | |
| IL_4Y4O_222 | 1/2A/1202:1206, 1/2A/1240:1243 | No text annotation Not in a motif group | homologous IL_7RQB_046 NA | |
| IL_4Y4O_223 | 1/2A/1208:1215, 1/2A/1234:1238 | Kink-turn Not in a motif group | ||
| IL_4Y4O_224 | 1/2A/1219:1221, 1/2A/1229:1230 | Single bulged A Not in a motif group | ||
| IL_4Y4O_225 | 1/2A/1262:1269, 1/2A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | ||
| IL_4Y4O_226 | 1/2A/1310:1313, 1/2A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_050 NA | |
| IL_4Y4O_227 | 1/2A/1319:1323, 1/2A/1331:1333 | C-loop Not in a motif group | ||
| IL_4Y4O_228 | 1/2A/1351:1355, 1/2A/1376:1380 | UAA/GAN Not in a motif group | ||
| IL_4Y4O_229 | 1/2A/1357:1361, 1/2A/1370:1374 | tSH-tHW-tHS Not in a motif group | ||
| IL_4Y4O_230 | 1/2A/1415:1416, 1/2A/1582:1587 | No text annotation Not in a motif group | homologous IL_7RQB_054 NA | |
| IL_4Y4O_231 | 1/2A/1417:1421, 1/2A/1577:1581 | UAA/GAN Not in a motif group | ||
| IL_4Y4O_232 | 1/2A/1433:1435, 1/2A/1557:1560 | Isolated tWW turn Not in a motif group | homologous IL_7RQB_056 NA | |
| IL_4Y4O_233 | 1/2A/1437:1440, 1/2A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7RQB_057 NA | |
| IL_4Y4O_234 | 1/2A/1448:1450, 1/2A/1462:1463 | Single stack bend Not in a motif group | homologous IL_7RQB_058 NA | |
| IL_4Y4O_235 | 1/2A/1450A:1451, 1/2A/1459:1461 | Single bulged A Not in a motif group | ||
| IL_4Y4O_236 | 1/2A/1469:1473, 1/2A/1518:1523 | UAA/GAN Not in a motif group | ||
| IL_4Y4O_237 | 1/2A/1481:1482, 1/2A/1506:1510 | No text annotation Not in a motif group | homologous IL_7RQB_061 NA | |
| IL_4Y4O_238 | 1/2A/1489:1491, 1/2A/1499:1500 | Single bulged A Not in a motif group | homologous IL_7RQB_062 NA | |
| IL_4Y4O_239 | 1/2A/1526:1529, 1/2A/1540:1546 | No text annotation Not in a motif group | homologous IL_7RQB_063 NA | |
| IL_4Y4O_240 | 1/2A/1651:1656, 1/2A/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4Y4O_241 | 1/2A/1686:1691, 1/2A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 NA | |
| IL_4Y4O_242 | 1/2A/1770:1771, 1/2A/1980:1982 | Single bulged A Not in a motif group | ||
| IL_4Y4O_243 | 1/2A/1798:1804, 1/2A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_4Y4O_244 | 1/2A/1837:1840, 1/2A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_4Y4O_245 | 1/2A/1841:1842, 1/2A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_072 NA | |
| IL_4Y4O_246 | 1/2A/1846:1849, 1/2A/1893:1894 | Minor groove platform Not in a motif group | ||
| IL_4Y4O_247 | 1/2A/1851:1855, 1/2A/1887:1891 | UAA/GAN with extra pair Not in a motif group | homologous IL_7RQB_074 NA | |
| IL_4Y4O_248 | 1/2A/1856:1860, 1/2A/1882:1886 | Triple sheared Not in a motif group | ||
| IL_4Y4O_249 | 1/2A/1933:1934, 1/2A/1964:1967 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_076 NA | |
| IL_4Y4O_250 | 1/2A/1934:1945, 1/2A/1961:1964 | No text annotation Not in a motif group | geometric IL_4WF9_077 IL_81589.2 | |
| IL_4Y4O_251 | 1/2A/2050:2052, 1/2A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 NA | |
| IL_4Y4O_252 | 1/2A/2054:2057, 1/2A/2611:2615 | No text annotation Not in a motif group | homologous IL_7RQB_079 NA | |
| IL_4Y4O_253 | 1/2A/2067:2069, 1/2A/2442:2443 | Single bulged U Not in a motif group | ||
| IL_4Y4O_254 | 1/2A/2070:2071, 1/2A/2438:2441 | Minor groove platform Not in a motif group | ||
| IL_4Y4O_255 | 1/2A/2081:2083, 1/2A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | ||
| IL_4Y4O_256 | 1/2A/2085:2087, 1/2A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 NA | |
| IL_4Y4O_263 | 1/2A/2297:2299, 1/2A/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | ||
| IL_4Y4O_264 | 1/2A/2350:2353, 1/2A/2364:2367 | Double sheared Not in a motif group | ||
| IL_4Y4O_265 | 1/2A/2401:2403, 1/2A/2414:2415 | Major groove platform Not in a motif group | homologous IL_7RQB_090 NA | |
| IL_4Y4O_266 | 1/2A/2453:2454, 1/2A/2498:2500 | Single stack bend Not in a motif group | geometric IL_7RQB_091 NA | |
| IL_4Y4O_267 | 1/2A/2454:2455, 1/2A/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 NA | |
| IL_4Y4O_268 | 1/2A/2456:2459, 1/2A/2493:2495 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 NA | |
| IL_4Y4O_269 | 1/2A/2459:2461, 1/2A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_7RQB_094 NA | |
| IL_4Y4O_270 | 1/2A/2466:2470, 1/2A/2480:2484 | Triple sheared Not in a motif group | ||
| IL_4Y4O_271 | 1/2A/2507:2508, 1/2A/2580:2582 | Major groove platform Not in a motif group | homologous IL_7RQB_096 NA | |
| IL_4Y4O_272 | 1/2A/2510:2512, 1/2A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_097 NA | |
| IL_4Y4O_273 | 1/2A/2512:2513, 1/2A/2571:2574 | Multiple bulged bases Not in a motif group | ||
| IL_4Y4O_274 | 1/2A/2522:2523, 1/2A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_7RQB_099 NA | |
| IL_4Y4O_275 | 1/2A/2588:2590, 1/2A/2604:2606 | No text annotation Not in a motif group | homologous IL_7RQB_100 NA | |
| IL_4Y4O_276 | 1/2A/2591:2592, 1/2A/2601:2603 | No text annotation Not in a motif group | homologous IL_8VTW_100 IL_16396.3 | |
| IL_4Y4O_277 | 1/2A/2636:2640, 1/2A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 NA | |
| IL_4Y4O_278 | 1/2A/2652:2658, 1/2A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | ||
| IL_4Y4O_279 | 1/2A/2680:2684, 1/2A/2725:2727 | C-loop Not in a motif group | ||
| IL_4Y4O_280 | 1/2A/2687:2691, 1/2A/2718:2722 | No text annotation Not in a motif group | homologous IL_7RQB_105 NA | |
| IL_4Y4O_281 | 1/2A/2695:2696, 1/2A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_106 NA | |
| IL_4Y4O_282 | 1/2A/2737:2742, 1/2A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_7RQB_107 NA | |
| IL_4Y4O_283 | 1/2A/2838:2839, 1/2A/2878:2880 | Single bulged C Not in a motif group | ||
| IL_4Y4O_284 | 1/2A/2843:2846, 1/2A/2870:2874 | No text annotation Not in a motif group | homologous IL_7RQB_109 NA | |
| IL_4Y4O_285 | 1/2A/2847:2852, 1/2A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 NA | |
| IL_4Y4O_286 | 1/2B/17:18, 1/2B/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_4Y4O_287 | 1/2B/23:28, 1/2B/56:60 | No text annotation Not in a motif group | homologous IL_7RQB_112 NA | |
| IL_4Y4O_288 | 1/2B/30:31, 1/2B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_7RQB_113 NA | |
| IL_4Y4O_289 | 1/2B/34:38, 1/2B/44:48 | Symmetric double minor groove platform Not in a motif group | geometric IL_7RQB_114 NA | |
| IL_4Y4O_290 | 1/2B/71:79, 1/2B/98:106 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA | |
| IL_4Y4O_291 | 1/2a/30:32, 1/2a/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.4 | |
| IL_4Y4O_292 | 1/2a/44:45, 1/2a/396:398 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.7 | |
| IL_4Y4O_293 | 1/2a/47:52, 1/2a/359:361 | No text annotation Not in a motif group | homologous IL_4LFB_003 IL_14177.1 | |
| IL_4Y4O_294 | 1/2a/54:56, 1/2a/356:357 | Minor groove platform Not in a motif group | homologous IL_5J7L_004 IL_80097.2 | |
| IL_4Y4O_295 | 1/2a/63:66, 1/2a/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4Y4O_296 | 1/2a/67:69, 1/2a/100:102 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_86319.3 | |
| IL_4Y4O_297 | 1/2a/129:131, 1/2a/231:232 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.3 | |
| IL_4Y4O_298 | 1/2a/132:136, 1/2a/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
| IL_4Y4O_299 | 1/2a/148:153, 1/2a/168:174 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4LFB_009 IL_39753.1 | |
| IL_4Y4O_300 | 1/2a/186:188, 1/2a/189L:191 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_86319.3 | |
| IL_4Y4O_301 | 1/2a/242:247, 1/2a/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_4Y4O_302 | 1/2a/249:252, 1/2a/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_4Y4O_303 | 1/2a/292:293, 1/2a/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_4Y4O_304 | 1/2a/367:369, 1/2a/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
| IL_4Y4O_305 | 1/2a/371:375, 1/2a/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_4Y4O_306 | 1/2a/375:376, 1/2a/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.4 | |
| IL_4Y4O_307 | 1/2a/409:416, 1/2a/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_4Y4O_308 | 1/2a/446:450, 1/2a/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_4LFB_018 IL_88269.3 | |
| IL_4Y4O_309 | 1/2a/450:455, 1/2a/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_4Y4O_311 | 1/2a/504:511, 1/2a/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.8 | |
| IL_4Y4O_312 | 1/2a/515:521, 1/2a/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4Y4O_313 | 1/2a/569:575, 1/2a/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_4Y4O_314 | 1/2a/580:584, 1/2a/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.2 | |
| IL_4Y4O_315 | 1/2a/594:596, 1/2a/644:645 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.4 | |
| IL_4Y4O_316 | 1/2a/597:598, 1/2a/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
| IL_4Y4O_317 | 1/2a/605:612, 1/2a/628:633 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_4Y4O_318 | 1/2a/654:655, 1/2a/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4LFB_027 IL_50694.3 | |
| IL_4Y4O_319 | 1/2a/657:658, 1/2a/747:749 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.4 | |
| IL_4Y4O_320 | 1/2a/662:666, 1/2a/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_4Y4O_321 | 1/2a/673:678, 1/2a/712:717 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.2 | |
| IL_4Y4O_322 | 1/2a/683:688, 1/2a/699:707 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_4Y4O_323 | 1/2a/774:778, 1/2a/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_4Y4O_324 | 1/2a/779:783, 1/2a/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
| IL_4Y4O_325 | 1/2a/887:894, 1/2a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4Y4O_326 | 1/2a/922:923, 1/2a/1393:1395 | Single bulged A Not in a motif group | homologous IL_4LFB_035 IL_37497.7 | |
| IL_4Y4O_327 | 1/2a/925:927, 1/2a/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_4Y4O_328 | 1/2a/933:935, 1/2a/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_4Y4O_329 | 1/2a/953:954, 1/2a/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_4Y4O_330 | 1/2a/993:997, 1/2a/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_4Y4O_332 | 1/2a/1048:1050, 1/2a/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.17 | |
| IL_4Y4O_333 | 1/2a/1050:1052, 1/2a/1206:1208 | No text annotation Not in a motif group | homologous IL_4LFB_043 NA | |
| IL_4Y4O_334 | 1/2a/1052:1056, 1/2a/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_4Y4O_335 | 1/2a/1057:1058, 1/2a/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
| IL_4Y4O_336 | 1/2a/1060:1061, 1/2a/1195:1197 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.17 | |
| IL_4Y4O_337 | 1/2a/1061:1063, 1/2a/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_86319.3 | |
| IL_4Y4O_338 | 1/2a/1124:1127, 1/2a/1145:1149 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.7 | |
| IL_4Y4O_339 | 1/2a/1129:1132, 1/2a/1142:1143 | Minor groove platform Not in a motif group | homologous IL_4LFB_049 IL_15052.1 | |
| IL_4Y4O_340 | 1/2a/1247:1253, 1/2a/1284:1290 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_4Y4O_341 | 1/2a/1255:1258, 1/2a/1277:1282 | No text annotation Not in a motif group | homologous IL_4LFB_052 IL_84205.1 | |
| IL_4Y4O_342 | 1/2a/1259:1260, 1/2a/1274:1276 | No text annotation Not in a motif group | ||
| IL_4Y4O_343 | 1/2a/1260:1262, 1/2a/1273:1274 | No text annotation Not in a motif group | ||
| IL_4Y4O_344 | 1/2a/1303:1308, 1/2a/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_4Y4O_345 | 1/2a/1399:1401, 1/2a/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_4Y4O_346 | 1/2a/1401:1405, 1/2a/1496:1501 | No text annotation Not in a motif group | homologous IL_4LFB_057 NA | |
| IL_4Y4O_347 | 1/2a/1405:1409, 1/2a/1491:1496 | No text annotation Not in a motif group | homologous IL_5J7L_060 NA | |
| IL_4Y4O_348 | 1/2a/1412:1415, 1/2a/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_6CZR_168 IL_67743.1 | |
| IL_4Y4O_349 | 1/2a/1416:1419, 1/2a/1481:1484 | Double sheared Not in a motif group | homologous IL_5J7L_062 IL_09705.11 | |
| IL_4Y4O_350 | 1/2a/1431:1435, 1/2a/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.2 | |
| IL_4Y4O_351 | 1/2a/1435:1437, 1/2a/1464:1466 | No text annotation Not in a motif group | homologous IL_4LFB_063 IL_86319.3 | |
| IL_4Y4O_352 | 1/2a/1440:1443, 1/2a/1459:1461 | Isolated basepair with bulged bases Not in a motif group | homologous IL_6CZR_172 IL_92788.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4Y4O_009 | Isolated cWH basepair | ||
| IL_4Y4O_010 | No text annotation | ||
| IL_4Y4O_043 | Major groove platform with extra cWW | ||
| IL_4Y4O_084 | No text annotation | ||
| IL_4Y4O_085 | No text annotation | ||
| IL_4Y4O_086 | No text annotation | ||
| IL_4Y4O_087 | No text annotation | ||
| IL_4Y4O_088 | Stack and bulge | ||
| IL_4Y4O_089 | UC cWW | ||
| IL_4Y4O_094 | Major groove platform | ||
| IL_4Y4O_114 | No text annotation | ||
| IL_4Y4O_157 | Isolated cWH basepair | ||
| IL_4Y4O_219 | Kink-turn | ||
| IL_4Y4O_220 | No text annotation | ||
| IL_4Y4O_257 | No text annotation | ||
| IL_4Y4O_258 | No text annotation | ||
| IL_4Y4O_259 | No text annotation | ||
| IL_4Y4O_260 | No text annotation | ||
| IL_4Y4O_261 | No text annotation | ||
| IL_4Y4O_262 | No text annotation | ||
| IL_4Y4O_310 | No text annotation | ||
| IL_4Y4O_331 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4Y4O_001 | 1/1A/730:736, 1/1A/820:822, 1/1A/838:841 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4Y4O_002 | 1/1A/745:747, 1/1A/779:783, 1/1A/807:810 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4Y4O_004 | 1/1A/1344:1349, 1/1A/1671:1673, 1/1A/1686:1689 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4Y4O_005 | 1/1A/1352:1355, 1/1A/1651:1657, 1/1A/1666:1668 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4Y4O_006 | 1/1A/2113:2115, 1/1A/2218:2222, 1/1A/2235:2240 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4Y4O_007 | 1/1A/2307:2309, 1/1A/2333:2335, 1/1A/2344:2349 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4Y4O_008 | 1/1A/2529:2532, 1/1A/2557:2559, 1/1A/2573:2579 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4Y4O_009 | 1/1A/2802:2804, 1/1A/2816:2821, 1/1A/2899:2903 | No text annotation Not in a motif group | homologous J3_7RQB_013 NA | |
| J3_4Y4O_010 | 1/1a/826:829, 1/1a/857:861, 1/1a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4Y4O_011 | 1/1a/936:939, 1/1a/1344:1350, 1/1a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4Y4O_012 | 1/1a/943:946, 1/1a/1235:1237, 1/1a/1337:1340 | No text annotation Not in a motif group | ||
| J3_4Y4O_013 | 1/1a/955:962, 1/1a/973:984, 1/1a/1221:1225 | No text annotation Not in a motif group | ||
| J3_4Y4O_014 | 1/1a/990:993, 1/1a/1045:1047, 1/1a/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4Y4O_016 | 1/1a/1063:1068, 1/1a/1107:1113, 1/1a/1187:1193 | No text annotation Not in a motif group | ||
| J3_4Y4O_017 | 1/1a/1116:1118, 1/1a/1155:1161, 1/1a/1175:1184 | No text annotation Not in a motif group | ||
| J3_4Y4O_018 | 1/1a/1237:1241, 1/1a/1296:1303, 1/1a/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA | |
| J3_4Y4O_019 | 1/2A/683:689, 1/2A/773:775, 1/2A/791:794 | No text annotation Not in a motif group | homologous J3_7RQB_004 NA | |
| J3_4Y4O_020 | 1/2A/698:700, 1/2A/732:736, 1/2A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_4Y4O_022 | 1/2A/1298:1303, 1/2A/1625:1627, 1/2A/1639:1642 | No text annotation Not in a motif group | homologous J3_7RQB_007 NA | |
| J3_4Y4O_023 | 1/2A/1306:1309, 1/2A/1605:1611, 1/2A/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4Y4O_024 | 1/2A/2091:2093, 1/2A/2196:2200, 1/2A/2223:2228 | No text annotation Not in a motif group | homologous J3_7RQB_010 NA | |
| J3_4Y4O_025 | 1/2A/2295:2297, 1/2A/2321:2323, 1/2A/2332:2337 | No text annotation Not in a motif group | homologous J3_7RQB_011 NA | |
| J3_4Y4O_026 | 1/2A/2517:2520, 1/2A/2545:2547, 1/2A/2561:2567 | No text annotation Not in a motif group | homologous J3_7RQB_012 NA | |
| J3_4Y4O_027 | 1/2a/826:829, 1/2a/857:861, 1/2a/868:874 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_4Y4O_028 | 1/2a/936:939, 1/2a/1344:1350, 1/2a/1372:1379 | No text annotation Not in a motif group | homologous J3_4LFB_002 NA | |
| J3_4Y4O_029 | 1/2a/943:946, 1/2a/1235:1237, 1/2a/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_4Y4O_030 | 1/2a/955:962, 1/2a/973:984, 1/2a/1221:1225 | No text annotation Not in a motif group | ||
| J3_4Y4O_031 | 1/2a/990:993, 1/2a/1045:1047, 1/2a/1210:1215 | No text annotation Not in a motif group | homologous J3_4LFB_005 NA | |
| J3_4Y4O_032 | 1/2a/1063:1068, 1/2a/1107:1113, 1/2a/1187:1193 | No text annotation Not in a motif group | ||
| J3_4Y4O_033 | 1/2a/1116:1118, 1/2a/1155:1161, 1/2a/1175:1184 | No text annotation Not in a motif group | ||
| J3_4Y4O_034 | 1/2a/1237:1241, 1/2a/1296:1303, 1/2a/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4Y4O_003 | No text annotation | ||
| J3_4Y4O_015 | No text annotation | ||
| J3_4Y4O_021 | No text annotation |
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