HL_4Y4O_012
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GUUCGUGGAGC
- Length
- 11 nucleotides
- Bulged bases
- 4Y4O|1|1A|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4Y4O_012 not in the Motif Atlas
- Homologous match to HL_7RQB_013
- Geometric discrepancy: 0.0282
- The information below is about HL_7RQB_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4Y4O|1|1A|G|409
4Y4O|1|1A|U|410
4Y4O|1|1A|U|411
4Y4O|1|1A|C|412
4Y4O|1|1A|G|413
4Y4O|1|1A|U|414
4Y4O|1|1A|G|415
4Y4O|1|1A|G|416
4Y4O|1|1A|A|417
4Y4O|1|1A|G|418
4Y4O|1|1A|C|419
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1P
- 50S ribosomal protein L15
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