HL_4Y4O_028
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GUUGGCUUAGAAGCAGCCAUC
- Length
- 21 nucleotides
- Bulged bases (A, C, G, U)
- 1122C
- QA status
- Missing nucleotides: 1105, 1106, 1107, 1108, 1109, 1110, 1111, 1112, 1113, 1114, 1115, 1116, 1117, 1118, 1119, 1120, 1121, 1122, 1123, 1124, 1125
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4Y4O|1|1A|G|1105
4Y4O|1|1A|U|1106
4Y4O|1|1A|U|1107
4Y4O|1|1A|G|1108
4Y4O|1|1A|G|1109
4Y4O|1|1A|C|1110
4Y4O|1|1A|U|1111
4Y4O|1|1A|U|1112
4Y4O|1|1A|A|1113
4Y4O|1|1A|G|1114
4Y4O|1|1A|A|1115
4Y4O|1|1A|A|1116
4Y4O|1|1A|G|1117
4Y4O|1|1A|C|1118
4Y4O|1|1A|A|1119
4Y4O|1|1A|G|1120
4Y4O|1|1A|C|1121
4Y4O|1|1A|C|1122
4Y4O|1|1A|A|1123
4Y4O|1|1A|U|1124
4Y4O|1|1A|C|1125
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1Z
- 50S ribosomal protein L25
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