HL_4Y4O_036

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases (A, C, G, U)

1501U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4O_036 not in the Motif Atlas

Homologous match to HL_7RQB_037

Geometric discrepancy: 0.046

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

4Y4O|1|1A|C|1499
4Y4O|1|1A|A|1500
4Y4O|1|1A|U|1501
4Y4O|1|1A|G|1502
4Y4O|1|1A|G|1503
4Y4O|1|1A|A|1504
4Y4O|1|1A|C|1505
4Y4O|1|1A|G|1506

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17