HL_4Y4O_116

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4Y4O|1|2A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32512.6

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

16

Unit IDs

4Y4O|1|2A|G|410
4Y4O|1|2A|G|411
4Y4O|1|2A|A|412
4Y4O|1|2A|C|413
4Y4O|1|2A|C|414
4Y4O|1|2A|A|415
4Y4O|1|2A|C|416
4Y4O|1|2A|C|417

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2P

50S ribosomal protein L15