HL_4Y4O_129
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAUAACG
- Length
- 8 nucleotides
- Bulged bases
- 4Y4O|1|2A|U|958, 4Y4O|1|2A|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_43074.14
- Basepair signature
- cWW-tSH-R-R
- Number of instances in this motif group
- 273
Unit IDs
4Y4O|1|2A|C|955
4Y4O|1|2A|G|956
4Y4O|1|2A|A|957
4Y4O|1|2A|U|958
4Y4O|1|2A|A|959
4Y4O|1|2A|A|960
4Y4O|1|2A|C|961
4Y4O|1|2A|G|962
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2B
- 5S ribosomal RNA; 5S rRNA
- Chain 2Q
- 50S ribosomal protein L16
Coloring options: