HL_4Y4O_131

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGUGGCUUAGAAGCAGCCAUCC

Length

22 nucleotides

Bulged bases

4Y4O|1|2A|A|1067, 4Y4O|1|2A|G|1068, 4Y4O|1|2A|C|1072, 4Y4O|1|2A|C|1076

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|2A|G|1058
4Y4O|1|2A|G|1059
4Y4O|1|2A|U|1060
4Y4O|1|2A|G|1062
4Y4O|1|2A|G|1063
4Y4O|1|2A|C|1064
4Y4O|1|2A|U|1065
4Y4O|1|2A|U|1066
4Y4O|1|2A|A|1067
4Y4O|1|2A|G|1068
4Y4O|1|2A|A|1069
4Y4O|1|2A|A|1070
4Y4O|1|2A|G|1071
4Y4O|1|2A|C|1072
4Y4O|1|2A|A|1073
4Y4O|1|2A|G|1074
4Y4O|1|2A|C|1075
4Y4O|1|2A|C|1076
4Y4O|1|2A|A|1077
4Y4O|1|2A|U|1078
4Y4O|1|2A|C|1079
4Y4O|1|2A|C|1080

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25