HL_4Y4O_147

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4Y4O|1|2A|A|1780, 4Y4O|1|2A|C|1781, 4Y4O|1|2A|C|1782, 4Y4O|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.3

Basepair signature

cWW-tWH-tWH-R

Number of instances in this motif group

5

Unit IDs

4Y4O|1|2A|U|1777
4Y4O|1|2A|U|1778
4Y4O|1|2A|U|1779
4Y4O|1|2A|A|1780
4Y4O|1|2A|C|1781
4Y4O|1|2A|C|1782
4Y4O|1|2A|A|1783
4Y4O|1|2A|A|1784
4Y4O|1|2A|A|1785
4Y4O|1|2A|A|1786
4Y4O|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22