3D structure

PDB id
4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CUAAAAGGUAACG
Length
13 nucleotides
Bulged bases
4Y4O|1|2A|A|2268, 4Y4O|1|2A|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.4
Basepair signature
cWW-tSH-tHH-tWW-R-R-R
Number of instances in this motif group
6

Unit IDs

4Y4O|1|2A|C|2264
4Y4O|1|2A|U|2265
4Y4O|1|2A|A|2266
4Y4O|1|2A|A|2267
4Y4O|1|2A|A|2268
4Y4O|1|2A|A|2269
4Y4O|1|2A|G|2270
4Y4O|1|2A|G|2271
4Y4O|1|2A|U|2272
4Y4O|1|2A|A|2273
4Y4O|1|2A|A|2274
4Y4O|1|2A|C|2275
4Y4O|1|2A|G|2276

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25

Coloring options:

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