3D structure

PDB id
4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CGCAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_46142.7
Basepair signature
cWW-R-R-R-R-R
Number of instances in this motif group
20

Unit IDs

4Y4O|1|2A|C|2324
4Y4O|1|2A|G|2325
4Y4O|1|2A|C|2326
4Y4O|1|2A|A|2327
4Y4O|1|2A|A|2328
4Y4O|1|2A|G|2329
4Y4O|1|2A|G|2330
4Y4O|1|2A|G|2331

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 20
50S ribosomal protein L27
Chain 2G
50S ribosomal protein L5
Chain 2Q
50S ribosomal protein L16
Chain 2Z
50S ribosomal protein L25

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4719 s