HL_4Y4O_169
3D structure
- PDB id
- 4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 4Y4O|1|2A|G|2751, 4Y4O|1|2A|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56677.4
- Basepair signature
- cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW
- Number of instances in this motif group
- 6
Unit IDs
4Y4O|1|2A|C|2745
4Y4O|1|2A|U|2746
4Y4O|1|2A|G|2747
4Y4O|1|2A|A|2748
4Y4O|1|2A|A|2749
4Y4O|1|2A|A|2750
4Y4O|1|2A|G|2751
4Y4O|1|2A|C|2752
4Y4O|1|2A|A|2753
4Y4O|1|2A|U|2754
4Y4O|1|2A|C|2755
4Y4O|1|2A|U|2756
4Y4O|1|2A|A|2757
4Y4O|1|2A|A|2758
4Y4O|1|2A|G|2759
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 29
- 50S ribosomal protein L36
- Chain 2H
- 50S ribosomal protein L6
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