3D structure

PDB id
4Y4O (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
4Y4O|1|2A|G|2751, 4Y4O|1|2A|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.4
Basepair signature
cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW
Number of instances in this motif group
6

Unit IDs

4Y4O|1|2A|C|2745
4Y4O|1|2A|U|2746
4Y4O|1|2A|G|2747
4Y4O|1|2A|A|2748
4Y4O|1|2A|A|2749
4Y4O|1|2A|A|2750
4Y4O|1|2A|G|2751
4Y4O|1|2A|C|2752
4Y4O|1|2A|A|2753
4Y4O|1|2A|U|2754
4Y4O|1|2A|C|2755
4Y4O|1|2A|U|2756
4Y4O|1|2A|A|2757
4Y4O|1|2A|A|2758
4Y4O|1|2A|G|2759

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2H
50S ribosomal protein L6

Coloring options:

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