HL_4Y4O_182

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4O_182 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0811

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4Y4O|1|2a|C|320
4Y4O|1|2a|A|321
4Y4O|1|2a|C|322
4Y4O|1|2a|U|323
4Y4O|1|2a|G|324
4Y4O|1|2a|A|325
4Y4O|1|2a|G|326
4Y4O|1|2a|A|327
4Y4O|1|2a|C|328
4Y4O|1|2a|A|329
4Y4O|1|2a|C|330
4Y4O|1|2a|G|331
4Y4O|1|2a|G|332
4Y4O|1|2a|G|333

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2t

30S ribosomal protein S20