HL_4Y4O_206

3D structure

PDB id

4Y4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

4Y4O|1|1A|G|1114, 4Y4O|1|1A|A|1115, 4Y4O|1|1A|A|1116, 4Y4O|1|1A|A|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Y4O|1|1A|G|1109
4Y4O|1|1A|C|1110
4Y4O|1|1A|U|1111
4Y4O|1|1A|U|1112
4Y4O|1|1A|A|1113
4Y4O|1|1A|G|1114
4Y4O|1|1A|A|1115
4Y4O|1|1A|A|1116
4Y4O|1|1A|G|1117
4Y4O|1|1A|C|1118
4Y4O|1|1A|A|1119
4Y4O|1|1A|G|1120
4Y4O|1|1A|C|1121

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25