3D structure

PDB id
4Y4P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
UGAAGAAG
Length
8 nucleotides
Bulged bases
4Y4P|1|1A|G|2541
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4Y4P_060 not in the Motif Atlas
Homologous match to HL_7RQB_061
Geometric discrepancy: 0.0544
The information below is about HL_7RQB_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91104.1
Basepair signature
cWW-F
Number of instances in this motif group
12

Unit IDs

4Y4P|1|1A|U|2540
4Y4P|1|1A|G|2541
4Y4P|1|1A|A|2542
4Y4P|1|1A|A|2543
4Y4P|1|1A|G|2544
4Y4P|1|1A|A|2545
4Y4P|1|1A|A|2546
4Y4P|1|1A|G|2547

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6

Coloring options:


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