HL_4Y4P_103

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

4Y4P|1|1w|G|18, 4Y4P|1|1w|G|19, 4Y4P|1|1w|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_103 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.1517

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4Y4P|1|1w|C|13
4Y4P|1|1w|A|14
4Y4P|1|1w|G|15
4Y4P|1|1w|G|18
4Y4P|1|1w|G|19
4Y4P|1|1w|U|20
4Y4P|1|1w|A|21
4Y4P|1|1w|G|22

Current chains

Chain 1w

A-site and E-site tRNAs

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA