HL_4Y4P_161

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4Y4P|1|2A|A|2030, 4Y4P|1|2A|A|2031, 4Y4P|1|2A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_161 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0642

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4Y4P|1|2A|G|2027
4Y4P|1|2A|U|2028
4Y4P|1|2A|G|2029
4Y4P|1|2A|A|2030
4Y4P|1|2A|A|2031
4Y4P|1|2A|G|2032
4Y4P|1|2A|A|2033
4Y4P|1|2A|U|2034
4Y4P|1|2A|G|2035
4Y4P|1|2A|C|2036

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3