HL_4Y4P_165

3D structure

PDB id

4Y4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4Y4P|1|2A|A|2268, 4Y4P|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4Y4P_165 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0663

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4Y4P|1|2A|C|2264
4Y4P|1|2A|U|2265
4Y4P|1|2A|A|2266
4Y4P|1|2A|A|2267
4Y4P|1|2A|A|2268
4Y4P|1|2A|A|2269
4Y4P|1|2A|G|2270
4Y4P|1|2A|G|2271
4Y4P|1|2A|U|2272
4Y4P|1|2A|A|2273
4Y4P|1|2A|A|2274
4Y4P|1|2A|C|2275
4Y4P|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16