HL_4YAZ_002

3D structure

PDB id

4YAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

3',3'-cGAMP riboswitch bound with 3',3'-cGAMP

Experimental method

X-RAY DIFFRACTION

Resolution

2 Å

Loop

Sequence

CCCUG

Length

5 nucleotides

Bulged bases

4YAZ|1|A|C|57, 4YAZ|1|A|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YAZ_002 not in the Motif Atlas

Homologous match to HL_4YAZ_004

Geometric discrepancy: 0.1612

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

4YAZ|1|A|C|56
4YAZ|1|A|C|57
4YAZ|1|A|C|58
4YAZ|1|A|U|59
4YAZ|1|A|G|60

Current chains

Chain A

RNA (84-MER)

Nearby chains

Chain R

Cyclic di-GMP-I riboswitch