HL_4YBB_026

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

4YBB|1|AA|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_026 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3716

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4YBB|1|AA|G|1133
4YBB|1|AA|G|1134
4YBB|1|AA|U|1135
4YBB|1|AA|C|1136
4YBB|1|AA|C|1137
4YBB|1|AA|G|1138
4YBB|1|AA|G|1139
4YBB|1|AA|C|1140
4YBB|1|AA|C|1141

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9