HL_4YBB_040

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_040 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0695

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4YBB|1|BA|A|320
4YBB|1|BA|A|321
4YBB|1|BA|C|322
4YBB|1|BA|U|323
4YBB|1|BA|G|324
4YBB|1|BA|A|325
4YBB|1|BA|G|326
4YBB|1|BA|A|327
4YBB|1|BA|C|328
4YBB|1|BA|A|329
4YBB|1|BA|C|330
4YBB|1|BA|G|331
4YBB|1|BA|G|332
4YBB|1|BA|U|333

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20