HL_4YBB_048

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_048 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.0635

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4YBB|1|BA|C|726
4YBB|1|BA|G|727
4YBB|1|BA|A|728
4YBB|1|BA|A|729
4YBB|1|BA|G|730
4YBB|1|BA|G|731

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BO

30S ribosomal protein S15

Chain BU

30S ribosomal protein S21