HL_4YBB_070

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_070 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.1341

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

4YBB|1|CA|C|225
4YBB|1|CA|A|226
4YBB|1|CA|A|227
4YBB|1|CA|C|228
4YBB|1|CA|C|229
4YBB|1|CA|G|230

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein L15