HL_4YBB_093

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

4YBB|1|CA|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_093 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3259

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4YBB|1|CA|G|1168
4YBB|1|CA|A|1169
4YBB|1|CA|C|1170
4YBB|1|CA|G|1171
4YBB|1|CA|C|1172
4YBB|1|CA|U|1173
4YBB|1|CA|U|1174
4YBB|1|CA|A|1175
4YBB|1|CA|U|1176
4YBB|1|CA|G|1177
4YBB|1|CA|C|1178
4YBB|1|CA|G|1179
4YBB|1|CA|U|1180
4YBB|1|CA|U|1181

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CS

50S ribosomal protein L21