HL_4YBB_126

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_126 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.0739

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4YBB|1|CA|C|2594
4YBB|1|CA|G|2595
4YBB|1|CA|U|2596
4YBB|1|CA|G|2597
4YBB|1|CA|A|2598
4YBB|1|CA|G|2599

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2