HL_4YBB_150

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4YBB|1|DA|U|546, 4YBB|1|DA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_150 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.1683

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4YBB|1|DA|G|543
4YBB|1|DA|C|544
4YBB|1|DA|U|545
4YBB|1|DA|U|546
4YBB|1|DA|A|547
4YBB|1|DA|G|548
4YBB|1|DA|G|549
4YBB|1|DA|C|550

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DK

50S ribosomal protein L13

Chain DS

50S ribosomal protein L21