HL_4YBB_182

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

4YBB|1|DA|A|1913, 4YBB|1|DA|C|1914, 4YBB|1|DA|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_182 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0478

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

4YBB|1|DA|G|1910
4YBB|1|DA|PSU|1911
4YBB|1|DA|A|1912
4YBB|1|DA|A|1913
4YBB|1|DA|C|1914
4YBB|1|DA|3TD|1915
4YBB|1|DA|A|1916
4YBB|1|DA|PSU|1917
4YBB|1|DA|A|1918
4YBB|1|DA|A|1919
4YBB|1|DA|C|1920

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA