HL_4YBB_189

3D structure

PDB id

4YBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution structure of the Escherichia coli ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4YBB|1|DA|A|2268, 4YBB|1|DA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YBB_189 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0415

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4YBB|1|DA|C|2264
4YBB|1|DA|U|2265
4YBB|1|DA|A|2266
4YBB|1|DA|A|2267
4YBB|1|DA|A|2268
4YBB|1|DA|G|2269
4YBB|1|DA|A|2270
4YBB|1|DA|G|2271
4YBB|1|DA|U|2272
4YBB|1|DA|A|2273
4YBB|1|DA|A|2274
4YBB|1|DA|C|2275
4YBB|1|DA|G|2276

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DN

50S ribosomal protein L16

Chain DX

50S ribosomal protein L27