HL_4YCO_006

3D structure

PDB id

4YCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YCO_006 not in the Motif Atlas

Homologous match to HL_6UGG_006

Geometric discrepancy: 0.0612

The information below is about HL_6UGG_006

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

4YCO|1|E|G|53
4YCO|1|E|U|54
4YCO|1|E|U|55
4YCO|1|E|C|56
4YCO|1|E|G|57
4YCO|1|E|A|58
4YCO|1|E|U|59
4YCO|1|E|U|60
4YCO|1|E|C|61

Current chains

Chain E

tRNAphe

Nearby chains

Chain B

tRNA-dihydrouridine synthase C

Chain F

Transfer RNA; tRNA