4YCO Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4YCO_001 | 1/D/13:22 | No text annotation HL_66853.7 | ||
| HL_4YCO_002 | 1/D/31:39 | tRNA anticodon loop HL_06059.7 | ||
| HL_4YCO_003 | 1/D/53:61 | T-loop with 2 stacked bulged bases HL_28252.9 | ||
| HL_4YCO_004 | 1/E/13:22 | No text annotation | homologous HL_4YCO_001 HL_66853.7 | |
| HL_4YCO_005 | 1/E/31:39 | tRNA anticodon loop | homologous HL_4YCO_002 HL_06059.7 | |
| HL_4YCO_006 | 1/E/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6UGG_006 HL_28252.9 | |
| HL_4YCO_007 | 1/F/13:22 | No text annotation | homologous HL_4YCO_001 HL_66853.7 | |
| HL_4YCO_010 | 1/F/31:39 | tRNA anticodon loop | homologous HL_4YCO_002 HL_06059.7 | |
| HL_4YCO_009 | 1/F/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YCO_003 HL_28252.9 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4YCO_008 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_4YCO_001 | 1/D/7:10, 1/D/25:27, 1/D/43:49, 1/D/65:66 | tRNA junction J4_36296.3 | ||
| J4_4YCO_002 | 1/E/7:10, 1/E/25:27, 1/E/43:49, 1/E/65:66 | tRNA junction | homologous J4_4YCO_001 J4_36296.3 | |
| J4_4YCO_003 | 1/F/7:10, 1/F/25:27, 1/F/43:49, 1/F/65:66 | tRNA junction | homologous J4_4YCO_001 J4_36296.3 |
Problematic loops
No problematic loops
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