HL_4YCO_010

3D structure

PDB id

4YCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YCO_010 not in the Motif Atlas

Homologous match to HL_4YCO_002

Geometric discrepancy: 0.1734

The information below is about HL_4YCO_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

4YCO|1|F|A|31
4YCO|1|F|U|32
4YCO|1|F|U|33
4YCO|1|F|G|34
4YCO|1|F|A|35
4YCO|1|F|A|36
4YCO|1|F|A|37
4YCO|1|F|A|38
4YCO|1|F|U|39

Current chains

Chain F

tRNAphe

Nearby chains

Chain E

Transfer RNA; tRNA