HL_4YHH_006
3D structure
- PDB id
- 4YHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- GGGUAAUGGCC
- Length
- 11 nucleotides
- Bulged bases
- 4YHH|1|A|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YHH_006 not in the Motif Atlas
- Geometric match to HL_6DME_003
- Geometric discrepancy: 0.3806
- The information below is about HL_6DME_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50525.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4YHH|1|A|G|258
4YHH|1|A|G|259
4YHH|1|A|G|260
4YHH|1|A|U|261
4YHH|1|A|A|262
4YHH|1|A|A|263
4YHH|1|A|U|264
4YHH|1|A|G|265
4YHH|1|A|G|266
4YHH|1|A|C|267
4YHH|1|A|C|268
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain Q
- 30S ribosomal protein S17
- Chain T
- 30S ribosomal protein S20
Coloring options: