HL_4YHH_032

3D structure

PDB id

4YHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CCGGAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YHH_032 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2142

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

4YHH|1|A|C|1514
4YHH|1|A|C|1515
4YHH|1|A|G|1516
4YHH|1|A|G|1517
4YHH|1|A|A|1518
4YHH|1|A|A|1519
4YHH|1|A|G|1520
4YHH|1|A|G|1521

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11