HL_4YPB_030
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 4YPB|1|QA|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.0763
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4YPB|1|QA|G|1356
4YPB|1|QA|A|1357
4YPB|1|QA|U|1358
4YPB|1|QA|C|1359
4YPB|1|QA|A|1360
4YPB|1|QA|G|1361
4YPB|1|QA|C|1362
4YPB|1|QA|C|1363
4YPB|1|QA|A|1363|||A
4YPB|1|QA|U|1364
4YPB|1|QA|G|1365
4YPB|1|QA|C|1366
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QI
- 30S ribosomal protein S9
- Chain QJ
- 30S ribosomal protein S10
- Chain QM
- 30S ribosomal protein S13
- Chain QN
- 30S ribosomal protein S14
- Chain QU
- 30S ribosomal protein Thx
Coloring options: