HL_4YPB_031

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

4YPB|1|QA|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_031 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2667

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4YPB|1|QA|C|1445
4YPB|1|QA|U|1446
4YPB|1|QA|A|1447
4YPB|1|QA|C|1452
4YPB|1|QA|G|1456
4YPB|1|QA|G|1457

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QT

30S ribosomal protein S20