HL_4YPB_077

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUACG

Length

6 nucleotides

Bulged bases

4YPB|1|RA|C|1537

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_077 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2377

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4YPB|1|RA|C|1533
4YPB|1|RA|G|1534
4YPB|1|RA|U|1535
4YPB|1|RA|A|1536
4YPB|1|RA|C|1537
4YPB|1|RA|G|1538

Current chains

Chain RA

23S rRNA

Nearby chains