HL_4YPB_087

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4YPB|1|RA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_087 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1331

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4YPB|1|RA|G|1910
4YPB|1|RA|U|1911
4YPB|1|RA|A|1912
4YPB|1|RA|A|1913
4YPB|1|RA|C|1914
4YPB|1|RA|U|1915
4YPB|1|RA|A|1916
4YPB|1|RA|U|1917
4YPB|1|RA|A|1918
4YPB|1|RA|A|1919
4YPB|1|RA|C|1920

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain QV

Transfer RNA; tRNA

Chain QY

Host inhibition of growth B