HL_4YPB_131

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4YPB|1|XA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_131 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1039

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4YPB|1|XA|G|963
4YPB|1|XA|A|964
4YPB|1|XA|A|965
4YPB|1|XA|G|966
4YPB|1|XA|C|967
4YPB|1|XA|A|968
4YPB|1|XA|A|969
4YPB|1|XA|C|970
4YPB|1|XA|G|971
4YPB|1|XA|C|972

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10

Chain XM

30S ribosomal protein S13

Chain XV

Transfer RNA; tRNA

Chain XY

Host inhibition of growth B