HL_4YPB_135

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4YPB|1|XA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_135 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1244

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4YPB|1|XA|G|1089
4YPB|1|XA|U|1090
4YPB|1|XA|U|1091
4YPB|1|XA|A|1092
4YPB|1|XA|A|1093
4YPB|1|XA|G|1094
4YPB|1|XA|U|1095
4YPB|1|XA|C|1096

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7