HL_4YPB_144
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_144 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.094
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4YPB|1|XV|G|31
4YPB|1|XV|C|32
4YPB|1|XV|U|33
4YPB|1|XV|C|34
4YPB|1|XV|A|35
4YPB|1|XV|U|36
4YPB|1|XV|A|37
4YPB|1|XV|A|38
4YPB|1|XV|C|39
Current chains
- Chain XV
- tRNA fMet
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XI
- 30S ribosomal protein S9
- Chain XW
- Transfer RNA; tRNA
- Chain XX
- messenger RNA
- Chain XY
- Host inhibition of growth B
Coloring options: