HL_4YPB_154

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

4YPB|1|YA|A|229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_154 not in the Motif Atlas

Homologous match to HL_7A0S_007

Geometric discrepancy: 0.192

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4YPB|1|YA|A|225
4YPB|1|YA|G|226
4YPB|1|YA|A|227
4YPB|1|YA|A|228
4YPB|1|YA|A|229
4YPB|1|YA|U|230

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YP

50S ribosomal protein L15