HL_4YPB_177

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

4YPB|1|YA|A|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_177 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.3575

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

4YPB|1|YA|C|1092
4YPB|1|YA|G|1093
4YPB|1|YA|U|1094
4YPB|1|YA|A|1095
4YPB|1|YA|A|1096
4YPB|1|YA|U|1097
4YPB|1|YA|A|1098
4YPB|1|YA|G|1099

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6