HL_4YPB_185

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4YPB|1|YA|C|1493, 4YPB|1|YA|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_185 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.1971

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4YPB|1|YA|G|1492
4YPB|1|YA|C|1493
4YPB|1|YA|A|1494
4YPB|1|YA|A|1495
4YPB|1|YA|A|1496
4YPB|1|YA|U|1497
4YPB|1|YA|C|1498

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2