HL_4YPB_196
3D structure
- PDB id
- 4YPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4YPB|1|YA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4YPB_196 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1195
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4YPB|1|YA|G|1910
4YPB|1|YA|U|1911
4YPB|1|YA|A|1912
4YPB|1|YA|A|1913
4YPB|1|YA|C|1914
4YPB|1|YA|U|1915
4YPB|1|YA|A|1916
4YPB|1|YA|U|1917
4YPB|1|YA|A|1918
4YPB|1|YA|A|1919
4YPB|1|YA|C|1920
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XV
- Transfer RNA; tRNA
- Chain XY
- Host inhibition of growth B
Coloring options: