HL_4YPB_204

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_204 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1978

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4YPB|1|YA|G|2303
4YPB|1|YA|G|2304
4YPB|1|YA|A|2305
4YPB|1|YA|C|2306
4YPB|1|YA|G|2307
4YPB|1|YA|G|2308
4YPB|1|YA|A|2309
4YPB|1|YA|A|2310
4YPB|1|YA|A|2311
4YPB|1|YA|U|2312
4YPB|1|YA|C|2313

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YB

5S ribosomal RNA; 5S rRNA

Chain YG

50S ribosomal protein L5