HL_4YPB_222

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAGCCUGGUAGC

Length

13 nucleotides

Bulged bases

4YPB|1|QW|C|16, 4YPB|1|QW|G|18, 4YPB|1|QW|G|19, 4YPB|1|QW|U|20, 4YPB|1|QW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_222 not in the Motif Atlas

Homologous match to HL_4WT8_234

Geometric discrepancy: 0.4679

The information below is about HL_4WT8_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96927.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4YPB|1|QW|G|12
4YPB|1|QW|C|13
4YPB|1|QW|A|14
4YPB|1|QW|G|15
4YPB|1|QW|C|16
4YPB|1|QW|C|17
4YPB|1|QW|U|17|||A
4YPB|1|QW|G|18
4YPB|1|QW|G|19
4YPB|1|QW|U|20
4YPB|1|QW|A|21
4YPB|1|QW|G|22
4YPB|1|QW|C|23

Current chains

Chain QW

tRNA fMet

Nearby chains

Chain QK

30S ribosomal protein S11

Chain RA

Large subunit ribosomal RNA; LSU rRNA