HL_4YPB_228

3D structure

PDB id

4YPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCGAUAA

Length

8 nucleotides

Bulged bases

4YPB|1|YA|U|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4YPB_228 not in the Motif Atlas

Homologous match to HL_4WF9_001

Geometric discrepancy: 0.303

The information below is about HL_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86769.4

Basepair signature

cWW-cWW-cSH-F

Number of instances in this motif group

5

Unit IDs

4YPB|1|YA|U|67
4YPB|1|YA|G|68
4YPB|1|YA|C|69
4YPB|1|YA|G|70
4YPB|1|YA|A|71
4YPB|1|YA|U|72
4YPB|1|YA|A|73
4YPB|1|YA|A|74

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y2

50S ribosomal protein L29

Chain Y7

50S ribosomal protein L34

Chain YX

50S ribosomal protein L23